Index

A

add_corrections_and_event_dose_to_output() (in module pyskindose.calculate_dose.add_correction_and_event_dose_to_output)

analyze_data() (in module pyskindose.analyze_data) analyze_normalized_data_with_custom_settings_object() (in module pyskindose.main)

B

Beam (class in pyskindose.beam_class)

C

calculate_dose() (in module pyskindose.calculate_dose.calculate_dose) calculate_field_size() (in module pyskindose.geom_calc) calculate_irradiation_event_result() (in module pyskindose.calculate_dose.calculate_irradiation_event_result) calculate_k_bs() (in module pyskindose.corrections) calculate_k_isq() (in module pyskindose.corrections) calculate_k_med() (in module pyskindose.corrections) calculate_k_tab() (in module pyskindose.corrections) check_hit() (Beam method) check_intersection() (Triangle method) check_new_geometry() (in module pyskindose.geom_calc) check_table_hits() (in module pyskindose.geom_calc) convert_from_m_to_cm() (in module pyskindose.geom_calc) convert_from_mm_to_cm() (in module pyskindose.geom_calc) create_attributes_string() (in module pyskindose.helpers.create_attributes_string)

create_dose_map_plot() (in module pyskindose.plotting.create_dose_map_plot) create_geometry_plot() (in module pyskindose.plotting.create_geometry_plot) create_geometry_plot_texts() (in module pyskindose.plotting.create_geometry_plot_texts) create_irradiation_event_procedure_plot_data() (in module pyskindose.plotting.create_irradiation_event_procedure_plot_data) create_layout_for_dose_map_plots() (in module pyskindose.plotting.create_layout_for_dose_map_plots) create_mesh_3d_general() (in module pyskindose.plotting.create_mesh3d) create_notebook_dose_map_plot() (in module pyskindose.plotting.create_notebook_dose_map_plot) create_plot_and_save_to_file() (in module pyskindose.plotting.create_plot_and_save_to_file) create_setup_and_event_plot() (in module pyskindose.plotting.create_setup_and_event_plot) create_wireframes() (in module pyskindose.plotting.create_wireframes) cylinder_length (PhantomDimensions attribute) cylinder_radii_a (PhantomDimensions attribute) cylinder_radii_b (PhantomDimensions attribute) cylinder_resolution (PhantomDimensions attribute)

D

d_lat (PatientOffset attribute) d_lon (PatientOffset attribute) d_ver (PatientOffset attribute) dark_mode (Plotsettings attribute) db_connect() (in module pyskindose.db_connect)

det_ijk (Beam attribute) det_r (Beam attribute) detector_side_length (NormalizationSettings attribute) dimension (PhantomSettings attribute) dose (Phantom attribute)

E

estimate_k_tab (PyskindoseSettings attribute)

F

fetch_and_append_hvl() (in module pyskindose.geom_calc) fetch_plot_colors() (in module pyskindose.plotting.plot_settings) fetch_plot_margin() (in module pyskindose.plotting.plot_settings)

fetch_plot_size() (in module pyskindose.plotting.plot_settings) fetch_slider_colors() (in module pyskindose.plotting.plot_settings) fetch_slider_padding() (in module pyskindose.plotting.plot_settings) field_size_mode (NormalizationSettings attribute)

G

get_argument_parser() (in module pyskindose.main)

get_camera_view() (in module pyskindose.plotting.get_camera_view) get_path_to_example_rdsr_files() (in module pyskindose)

H

human_mesh (PhantomSettings attribute)

I

ijk (Beam attribute) (Phantom attribute)

inherent_filtration (PyskindoseSettings attribute) initialize_settings() (in module pyskindose.settings.pyskindose_settings) interactivity (Plotsettings attribute)

K

k_tab_val (PyskindoseSettings attribute)

L

load_settings_example_json() (in module pyskindose)

M

main() (in module pyskindose.main) max_events_for_patient_inclusion (Plotsettings attribute) mode (PyskindoseSettings attribute) model (PhantomSettings attribute) module pyskindose pyskindose.analyze_data pyskindose.beam_class pyskindose.calculate_dose pyskindose.calculate_dose.add_correction_and_event_dose_to_output pyskindose.calculate_dose.calculate_dose pyskindose.calculate_dose.calculate_irradiation_event_result pyskindose.calculate_dose.perform_calculations_for_new_geometries pyskindose.constants pyskindose.corrections pyskindose.db_connect pyskindose.dev_data pyskindose.geom_calc pyskindose.helpers pyskindose.helpers.create_attributes_string pyskindose.main pyskindose.phantom_class pyskindose.plotting pyskindose.plotting.create_dose_map_plot pyskindose.plotting.create_geometry_plot pyskindose.plotting.create_geometry_plot_texts pyskindose.plotting.create_irradiation_event_procedure_plot_data pyskindose.plotting.create_layout_for_dose_map_plots pyskindose.plotting.create_mesh3d pyskindose.plotting.create_notebook_dose_map_plot pyskindose.plotting.create_plot_and_save_to_file pyskindose.plotting.create_ploty_ijk_indices pyskindose.plotting.create_setup_and_event_plot pyskindose.plotting.create_wireframes pyskindose.plotting.get_camera_view pyskindose.plotting.get_visual_offset pyskindose.plotting.plot_event pyskindose.plotting.plot_geometry pyskindose.plotting.plot_procedure pyskindose.plotting.plot_settings pyskindose.plotting.plot_setup pyskindose.rdsr_normalizer pyskindose.rdsr_parser pyskindose.settings pyskindose.settings.normalization_settings pyskindose.settings.patient_offset pyskindose.settings.phantom_dimensions pyskindose.settings.phantom_settings pyskindose.settings.plot_settings pyskindose.settings.pyskindose_settings pyskindose.settings.rotation_direction pyskindose.settings.translation_direction pyskindose.settings.translation_offset

N

N (Beam attribute) n (Phantom attribute) (Triangle attribute)

NormalizationSettings (class in pyskindose.settings.normalization_settings) notebook_mode (Plotsettings attribute)

P

p (Triangle attribute) p1 (Triangle attribute) p2 (Triangle attribute) pad_length (PhantomDimensions attribute) pad_thickness (PhantomDimensions attribute) pad_width (PhantomDimensions attribute) patient_offset (PhantomSettings attribute) patient_orientation (PhantomSettings attribute) PatientOffset (class in pyskindose.settings.patient_offset) perform_calculations_for_new_geometries() (in module pyskindose.calculate_dose.perform_calculations_for_new_geometries) Phantom (class in pyskindose.phantom_class) phantom (PyskindoseSettings attribute) phantom_model (Phantom attribute) PhantomDimensions (class in pyskindose.settings.phantom_dimensions) PhantomSettings (class in pyskindose.settings.phantom_settings) plane_length (PhantomDimensions attribute) plane_resolution (PhantomDimensions attribute) plane_width (PhantomDimensions attribute) plot (PyskindoseSettings attribute) plot_dosemap (Plotsettings attribute) plot_event() (in module pyskindose.plotting.plot_event) plot_event_index (Plotsettings attribute) plot_geometry() (in module pyskindose.plotting.plot_geometry) plot_procedure() (in module pyskindose.plotting.plot_procedure) plot_setup() (in module pyskindose.plotting.plot_setup) Plotsettings (class in pyskindose.settings.plot_settings) position() (Phantom method) position_patient_phantom_on_table() (in module pyskindose.geom_calc) print_available_human_phantoms() (in module pyskindose) print_example_rdsr_files() (in module pyskindose) print_parameters() (PyskindoseSettings method) pyskindose module pyskindose.analyze_data module pyskindose.beam_class module pyskindose.calculate_dose module pyskindose.calculate_dose.add_correction_and_event_dose_to_output module pyskindose.calculate_dose.calculate_dose module pyskindose.calculate_dose.calculate_irradiation_event_result module pyskindose.calculate_dose.perform_calculations_for_new_geometries module pyskindose.constants module pyskindose.corrections module pyskindose.db_connect module pyskindose.dev_data module pyskindose.geom_calc module pyskindose.helpers module pyskindose.helpers.create_attributes_string module pyskindose.main module pyskindose.phantom_class module

pyskindose.plotting module pyskindose.plotting.create_dose_map_plot module pyskindose.plotting.create_geometry_plot module pyskindose.plotting.create_geometry_plot_texts module pyskindose.plotting.create_irradiation_event_procedure_plot_data module pyskindose.plotting.create_layout_for_dose_map_plots module pyskindose.plotting.create_mesh3d module pyskindose.plotting.create_notebook_dose_map_plot module pyskindose.plotting.create_plot_and_save_to_file module pyskindose.plotting.create_ploty_ijk_indices module pyskindose.plotting.create_setup_and_event_plot module pyskindose.plotting.create_wireframes module pyskindose.plotting.get_camera_view module pyskindose.plotting.get_visual_offset module pyskindose.plotting.plot_event module pyskindose.plotting.plot_geometry module pyskindose.plotting.plot_procedure module pyskindose.plotting.plot_settings module pyskindose.plotting.plot_setup module pyskindose.rdsr_normalizer module pyskindose.rdsr_parser module pyskindose.settings module pyskindose.settings.normalization_settings module pyskindose.settings.patient_offset module pyskindose.settings.phantom_dimensions module pyskindose.settings.phantom_settings module pyskindose.settings.plot_settings module pyskindose.settings.pyskindose_settings module pyskindose.settings.rotation_direction module pyskindose.settings.translation_direction module pyskindose.settings.translation_offset module PyskindoseSettings (class in pyskindose.settings.pyskindose_settings)

R

r (Beam attribute) (Phantom attribute) r_ref (Phantom attribute) rdsr_filename (PyskindoseSettings attribute)

rdsr_normalizer() (in module pyskindose.rdsr_normalizer) rdsr_parser() (in module pyskindose.rdsr_parser) rot_dir (NormalizationSettings attribute) rotate() (Phantom method) RotationDirection (class in pyskindose.settings.rotation_direction)

S

save_position() (Phantom method)

scale_field_area() (in module pyskindose.geom_calc)

T

table_length (Phantom attribute) (PhantomDimensions attribute) table_thickness (PhantomDimensions attribute) table_width (PhantomDimensions attribute) to_dict_cylinder() (PhantomDimensions method) to_dict_pad() (PhantomDimensions method) to_printable_string() (NormalizationSettings method) (PhantomSettings method) (Plotsettings method)

trans_dir (NormalizationSettings attribute) trans_offset (NormalizationSettings attribute) translate() (Phantom method) TranslationDirection (class in pyskindose.settings.translation_direction) TranslationOffset (class in pyskindose.settings.translation_offset) Triangle (class in pyskindose.geom_calc)

U

update_attrs_str() (NormalizationSettings method) (PatientOffset method) (PhantomDimensions method) (PhantomSettings method) (Plotsettings method)

update_rotation_direction() (RotationDirection method) update_translation_direction() (TranslationDirection method) update_translation_offset() (TranslationOffset method) update_used_settings() (NormalizationSettings method)

V

vector() (in module pyskindose.geom_calc)

X

x (TranslationDirection attribute)

Y

y (TranslationDirection attribute)

Z

z (TranslationDirection attribute)